diff --git a/.gitignore b/.gitignore
index 15cc34a4..ef7ac00f 100644
--- a/.gitignore
+++ b/.gitignore
@@ -12,7 +12,7 @@
 bin/
 build/
 gen/
-libs/
+src/main/jniLibs/
 obj/
 .gradle/
 
diff --git a/build.gradle b/build.gradle
index 11a90b47..309bf4f5 100644
--- a/build.gradle
+++ b/build.gradle
@@ -45,12 +45,6 @@ android {
         testFunctionalTest true
     }
 
-    sourceSets {
-        main {
-            jniLibs.srcDir file("libs/")
-        }
-    }
-
     // Without this parameter, all builds fail with error:
     //     Execution failed for task ':mergeArmeabiDebugResources'.
     //     > Some file crunching failed, see logs for details
@@ -110,9 +104,7 @@ task buildNative(type: Exec) {
 }
 
 task cleanNative(type: Delete) {
-    delete 'bin/'
-    delete 'build/'
-    delete 'libs/'
+    delete 'src/main/jniLibs/'
     delete 'ext/syncthing/bin/'
     delete 'ext/syncthing/pkg/'
 }
diff --git a/make-syncthing.bash b/make-syncthing.bash
index f1838850..a4bcd77d 100755
--- a/make-syncthing.bash
+++ b/make-syncthing.bash
@@ -5,6 +5,7 @@ set -e
 RESET=1
 
 MYDIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
+JNIDIR="/src/main/jniLibs"
 
 case "$1" in
     arm)
@@ -12,20 +13,20 @@ case "$1" in
         export GOOS=linux
         export GOARCH=arm
         export GOARM=5
-        export TARGETDIR=${MYDIR}/libs/armeabi
+        export TARGETDIR=$MYDIR$JNIDIR/armeabi
         ;;
     386)
         export CGO_ENABLED=0
         export GOOS=linux
         export GOARCH=386
         export GO386=387
-        export TARGETDIR=${MYDIR}/libs/x86
+        export TARGETDIR=$MYDIR$JNIDIR/x86
         ;;
     amd64)
         export CGO_ENABLED=0
         export GOOS=linux
         export GOARCH=amd64
-        export TARGETDIR=${MYDIR}/libs/x86_64
+        export TARGETDIR=$MYDIR$JNIDIR/x86_64
         ;;
     *)
         echo "Must specify either arm or 386 or amd64"